Yang Shen

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Bioinformatics Databases / Servers


Science, Nature, Proceedings of the National Academy of Sciences
Current Opinion in Structural Biology
Current Opinion in Cell Biology
Computational Biology:
Proteins: Structure, Function, and Bioinformatics
Journal of Molecular Biology
BMC Bioinformatics
Protein Science
PLoS Computational Biology
Biophysical Journal
IEEE-ACM Transactions on Computational Biology and Bioinformatics
Nucleic Acids Research
Multiscale Modeling & Simulation

Applied Mathematics
Mathematical Programming
Automatic Control, IEEE Transactions on
Journal of Computational and Applied Mathematics


Global Optimization, an archive
NEOS Server
Benchmarks for Optimization Software
Optimization Online
Semidefinite Programming

Computer Tutorials

Linux Shell Scripting Tutorial for Beginners
Message Passing Interface
Java servlet & JSP Cookbook
Java Servlet Programming
Version Control with Subversion


Seminar Series @ TTIC/UChicago: TTIC Events, Computer Science, Statistics, LANS, Biomedical Sciences, Biophysics, Chemistry, Genomics & Systems Biology, Chicago Center for Systems Biology

Seminar Series @MIT: Biological Engineering, CSAIL, Biophysics, Applied Math, Biology, Bioinformatics, LIDS

Nature Network Boston
Boston IEEE Section Techsite
BAGIM (Group for Informatics and Modeling)
Broad Institute
Biotech List